IL_3G4S_116

3D structure

PDB id

3G4S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Co-crystal structure of Tiamulin bound to the large ribosomal subunit

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

GUGG*CGC

Length

7 nucleotides

Bulged bases

3G4S|1|0|G|1137

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3G4S_116 not in the Motif Atlas

Geometric match to IL_1U6B_001

Geometric discrepancy: 0.2866

The information below is about IL_1U6B_001

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_57744.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

22

Unit IDs

3G4S|1|0|G|1135
3G4S|1|0|U|1136
3G4S|1|0|G|1137
3G4S|1|0|G|1138
*
3G4S|1|0|C|1225
3G4S|1|0|G|1226
3G4S|1|0|C|1227

Current chains

Chain 0

23S ribosomal RNA

Nearby chains

Chain 9

5S ribosomal RNA; 5S rRNA

Chain E

50S ribosomal protein L6P

Chain H

50S ribosomal protein L10e