IL_3G6E_010

3D structure

PDB id

3G6E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Co-crystal structure of Homoharringtonine bound to the large ribosomal subunit

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

GG*UGC

Length

5 nucleotides

Bulged bases

3G6E|1|0|G|375

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3G6E_010 not in the Motif Atlas

Homologous match to IL_4V9F_010

Geometric discrepancy: 0.0588

The information below is about IL_4V9F_010

Detailed Annotation

Single bulged G

Broad Annotation

No text annotation

Motif group

IL_28408.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

60

Unit IDs

3G6E|1|0|G|274
3G6E|1|0|G|275
*
3G6E|1|0|U|374
3G6E|1|0|G|375
3G6E|1|0|C|376

Current chains

Chain 0

23S ribosomal RNA

Nearby chains

Chain F

50S ribosomal protein L7Ae

Chain M

50S ribosomal protein L15e