IL_3G6E_055

3D structure

PDB id

3G6E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Co-crystal structure of Homoharringtonine bound to the large ribosomal subunit

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

CGAAC*GCAUAG

Length

11 nucleotides

Bulged bases

3G6E|1|0|U|1625

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3G6E_055 not in the Motif Atlas

Homologous match to IL_4V9F_056

Geometric discrepancy: 0.0835

The information below is about IL_4V9F_056

Detailed Annotation

tSH-tHH-tHS

Broad Annotation

No text annotation

Motif group

IL_62654.1

Basepair signature

cWW-tSH-tHH-tHS-cWW

Number of instances in this motif group

1

Unit IDs

3G6E|1|0|C|1570
3G6E|1|0|G|1571
3G6E|1|0|A|1572
3G6E|1|0|A|1573
3G6E|1|0|C|1574
*
3G6E|1|0|G|1622
3G6E|1|0|C|1623
3G6E|1|0|A|1624
3G6E|1|0|U|1625
3G6E|1|0|A|1626
3G6E|1|0|G|1627

Current chains

Chain 0

23S ribosomal RNA

Nearby chains