IL_3G6E_108

3D structure

PDB id

3G6E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Co-crystal structure of Homoharringtonine bound to the large ribosomal subunit

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

GGUGA*UACCC

Length

10 nucleotides

Bulged bases

3G6E|1|0|G|1165

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3G6E_108 not in the Motif Atlas

Geometric match to IL_5J7L_384

Geometric discrepancy: 0.2446

The information below is about IL_5J7L_384

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_33835.1

Basepair signature

cWW-L-R-L-R-L-cWW

Number of instances in this motif group

1

Unit IDs

3G6E|1|0|G|1162
3G6E|1|0|G|1163
3G6E|1|0|U|1164
3G6E|1|0|G|1165
3G6E|1|0|A|1166
*
3G6E|1|0|U|1180
3G6E|1|0|A|1181
3G6E|1|0|C|1182
3G6E|1|0|C|1183
3G6E|1|0|C|1184

Current chains

Chain 0

23S ribosomal RNA

Nearby chains

Chain I

50S ribosomal protein L11P