IL_3GS8_001
3D structure
- PDB id
- 3GS8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- An all-RNA hairpin ribozyme A38N1dA38 variant with a transition-state mimic substrate strand
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.85 Å
Loop
- Sequence
- CAGUCC*GAGAAG
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_80926.1
- Basepair signature
- cWW-cWW-tSH-tHS-L-cWW
- Number of instances in this motif group
- 7
Unit IDs
3GS8|1|A|C|4
3GS8|1|A|A|5
3GS8|1|A|G|6
3GS8|1|A|U|7
3GS8|1|A|C|8
3GS8|1|A|C|9
*
3GS8|1|B|G|6
3GS8|1|B|A|7
3GS8|1|B|G|8
3GS8|1|B|A|9
3GS8|1|B|A|10
3GS8|1|B|G|11
Current chains
- Chain A
- RNA (5'-R(*UP*CP*CP*CP*AP*GP*UP*CP*CP*AP*CP*CP*GP*U)-3')
- Chain B
- RNA (5'-R(*CP*GP*GP*UP*GP*AP*GP*AP*AP*GP*GP*G)-3')
Nearby chains
- Chain C
- RNA (5'-R(P*GP*GP*CP*AP*GP*AP*GP*AP*AP*AP*CP*AP*CP*AP*CP*GP*A)-3')
- Chain D
- RNA (5'-R(*UP*CP*GP*UP*GP*GP*UP*AP*CP*AP*UP*UP*AP*CP*CP*UP*GP*CP*C)-3')
Coloring options: