IL_3HAX_001

3D structure

PDB id

3HAX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of a substrate-bound Gar1-minus H/ACA RNP from Pyrococcus furiosus

Experimental method

X-RAY DIFFRACTION

Resolution

2.11 Å

Loop

Sequence

CUUGAGUG*UAAUUAUG

Length

16 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_74746.1

Basepair signature

cWW-L-R-L-R-L-R-L-R-L-R-L-R-cWW

Number of instances in this motif group

2

Unit IDs

3HAX|1|E|C|9
3HAX|1|E|U|10
3HAX|1|E|U|11
3HAX|1|E|G|12
3HAX|1|E|A|13
3HAX|1|E|G|14
3HAX|1|E|U|15
3HAX|1|E|G|16
*
3HAX|1|E|U|42
3HAX|1|E|A|43
3HAX|1|E|A|44
3HAX|1|E|U|45
3HAX|1|E|U|46
3HAX|1|E|A|47
3HAX|1|E|U|48
3HAX|1|E|G|49

Current chains

Chain E

H/ACA RNA

Nearby chains

Chain A

Probable tRNA pseudouridine synthase B

Chain F

5'-R(*AP*UP*AP*AP*UP*UP*(FHU)P*GP*AP*CP*UP*CP*AP*A)-3'