3D structure

PDB id
3I55 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Co-crystal structure of Mycalamide A Bound to the Large Ribosomal Subunit
Experimental method
X-RAY DIFFRACTION
Resolution
3.11 Å

Loop

Sequence
UUAGUAA*UGAACG
Length
13 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_3I55_007 not in the Motif Atlas
Homologous match to IL_4V9F_007
Geometric discrepancy: 0.0499
The information below is about IL_4V9F_007
Detailed Annotation
7x6 Sarcin-Ricin; G-bulge
Broad Annotation
Sarcin-Ricin; G-bulge
Motif group
IL_02666.1
Basepair signature
cWW-tSH-tHH-cSH-tWH-tHS-cWW
Number of instances in this motif group
17

Unit IDs

3I55|1|0|U|210
3I55|1|0|U|211
3I55|1|0|A|212
3I55|1|0|G|213
3I55|1|0|U|214
3I55|1|0|A|215
3I55|1|0|A|216
*
3I55|1|0|U|224
3I55|1|0|G|225
3I55|1|0|A|226
3I55|1|0|A|227
3I55|1|0|C|228
3I55|1|0|G|229

Current chains

Chain 0
23S ribosomal RNA

Nearby chains

Chain L
50S ribosomal protein L15P
Chain M
50S ribosomal protein L15e

Coloring options:


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