IL_3I55_082

3D structure

PDB id

3I55 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Co-crystal structure of Mycalamide A Bound to the Large Ribosomal Subunit

Experimental method

X-RAY DIFFRACTION

Resolution

3.11 Å

Loop

Sequence

GUC*GGCUU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3I55_082 not in the Motif Atlas

Geometric match to IL_4V9F_084

Geometric discrepancy: 0.105

The information below is about IL_4V9F_084

Detailed Annotation

Major groove minor groove platform with extra cWW

Broad Annotation

Major groove minor groove platform with extra cWW

Motif group

IL_36931.2

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

24

Unit IDs

3I55|1|0|G|2494
3I55|1|0|U|2495
3I55|1|0|C|2496
*
3I55|1|0|G|2524
3I55|1|0|G|2525
3I55|1|0|C|2526
3I55|1|0|U|2527
3I55|1|0|U|2528

Current chains

Chain 0

23S ribosomal RNA

Nearby chains

Chain 4

DNA/RNA (5'-R(*CP*CP*(5AA)P*(2OP)P*(PO2)P*AP*CP*C)-3')

Chain B

50S ribosomal protein L3P

Chain H

50S ribosomal protein L10e