IL_3I55_085

3D structure

PDB id

3I55 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Co-crystal structure of Mycalamide A Bound to the Large Ribosomal Subunit

Experimental method

X-RAY DIFFRACTION

Resolution

3.11 Å

Loop

Sequence

UUC*GUGAG

Length

8 nucleotides

Bulged bases

3I55|1|0|G|2611, 3I55|1|0|A|2612

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3I55_085 not in the Motif Atlas

Homologous match to IL_4V9F_087

Geometric discrepancy: 0.083

The information below is about IL_4V9F_087

Detailed Annotation

Isolated non-canonical cWW with bulges

Broad Annotation

Isolated non-canonical cWW with bulges

Motif group

IL_68118.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

27

Unit IDs

3I55|1|0|U|2545
3I55|1|0|U|2546
3I55|1|0|C|2547
*
3I55|1|0|G|2609
3I55|1|0|U|2610
3I55|1|0|G|2611
3I55|1|0|A|2612
3I55|1|0|G|2613

Current chains

Chain 0

23S ribosomal RNA

Nearby chains

Chain 4

DNA/RNA (5'-R(*CP*CP*(5AA)P*(2OP)P*(PO2)P*AP*CP*C)-3')

Chain B

50S ribosomal protein L3P

Chain K

50S ribosomal protein L14P