IL_3I55_087

3D structure

PDB id

3I55 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Co-crystal structure of Mycalamide A Bound to the Large Ribosomal Subunit

Experimental method

X-RAY DIFFRACTION

Resolution

3.11 Å

Loop

Sequence

UG*CAAG

Length

6 nucleotides

Bulged bases

3I55|1|0|A|2577

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3I55_087 not in the Motif Atlas

Homologous match to IL_4V9F_089

Geometric discrepancy: 0.0856

The information below is about IL_4V9F_089

Detailed Annotation

Major groove platform with intercalation

Broad Annotation

Major groove platform

Motif group

IL_94991.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

15

Unit IDs

3I55|1|0|U|2557
3I55|1|0|G|2558
*
3I55|1|0|C|2575
3I55|1|0|A|2576
3I55|1|0|A|2577
3I55|1|0|G|2578

Current chains

Chain 0

23S ribosomal RNA

Nearby chains

Chain J

50S ribosomal protein L13P