3D structure

PDB id
3I56 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Co-crystal structure of Triacetyloleandomcyin Bound to the Large Ribosomal Subunit
Experimental method
X-RAY DIFFRACTION
Resolution
2.9 Å

Loop

Sequence
UUAAG*CGAGA
Length
10 nucleotides
Bulged bases
3I56|1|0|G|1260
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_3I56_037 not in the Motif Atlas
Homologous match to IL_4V9F_037
Geometric discrepancy: 0.0489
The information below is about IL_4V9F_037
Detailed Annotation
UAA/GAN
Broad Annotation
No text annotation
Motif group
IL_08938.2
Basepair signature
cWW-tWH-L-tHS-cWW
Number of instances in this motif group
25

Unit IDs

3I56|1|0|U|1095
3I56|1|0|U|1096
3I56|1|0|A|1097
3I56|1|0|A|1098
3I56|1|0|G|1099
*
3I56|1|0|C|1257
3I56|1|0|G|1258
3I56|1|0|A|1259
3I56|1|0|G|1260
3I56|1|0|A|1261

Current chains

Chain 0
23S ribosomal RNA

Nearby chains

Chain 9
5S ribosomal RNA; 5S rRNA
Chain W
50S ribosomal protein L30P
Chain Y
50S ribosomal protein L32e

Coloring options:


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