IL_3IIN_009
3D structure
- PDB id
- 3IIN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Plasticity of the kink turn structural motif
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 4.18 Å
Loop
- Sequence
- AGACGGCACCC*GAAGGCAU
- Length
- 19 nucleotides
- Bulged bases
- 3IIN|1|B|C|171, 3IIN|1|B|A|172
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_3IIN_009 not in the Motif Atlas
- Geometric match to IL_1U6B_008
- Geometric discrepancy: 0.0913
- The information below is about IL_1U6B_008
- Detailed Annotation
- Pseudoknot
- Broad Annotation
- No text annotation
- Motif group
- IL_43467.1
- Basepair signature
- cWW-L-R-L-R-L-R-L-R-L-cWW-L-L-R-L
- Number of instances in this motif group
- 1
Unit IDs
3IIN|1|B|A|134
3IIN|1|B|G|135
3IIN|1|B|A|136
3IIN|1|B|C|137
3IIN|1|B|G|138
3IIN|1|B|G|139
3IIN|1|B|C|140
3IIN|1|B|A|141
3IIN|1|B|C|142
3IIN|1|B|C|143
3IIN|1|B|C|144
*
3IIN|1|B|G|166
3IIN|1|B|A|167
3IIN|1|B|A|168
3IIN|1|B|G|169
3IIN|1|B|G|170
3IIN|1|B|C|171
3IIN|1|B|A|172
3IIN|1|B|U|173
Current chains
- Chain B
- Group I intron
Nearby chains
- Chain C
- DNA/RNA (5'-R(*AP*AP*GP*CP*CP*AP*CP*AP*CP*AP*GP*AP*CP*C)-D(P*AP*GP*A)-R(P*CP*GP*GP*CP*C)-3')
- Chain D
- DNA/RNA (5'-R(*CP*A)-D(P*T)-3')
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