IL_3IQR_005

3D structure

PDB id

3IQR (explore in PDB, NAKB, or RNA 3D Hub)

Description

SAM-I riboswitch from T. tencongensis variant A94G bound with SAM

Experimental method

X-RAY DIFFRACTION

Resolution

2.55 Å

Loop

Sequence

GAG*CC

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3IQR_005 not in the Motif Atlas

Geometric match to IL_7TZS_003

Geometric discrepancy: 0.3971

The information below is about IL_7TZS_003

Detailed Annotation

Minor groove platform related

Broad Annotation

Minor groove platform related

Motif group

IL_34520.1

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

58

Unit IDs

3IQR|1|A|G|13||||7_555
3IQR|1|A|A|14||||7_555
3IQR|1|A|G|15||||7_555
*
3IQR|1|A|C|40||||7_555
3IQR|1|A|C|41||||7_555

Current chains

Chain A

SAM-I riboswitch

Nearby chains