IL_3IYR_001

3D structure

PDB id

3IYR (explore in PDB, NAKB, or RNA 3D Hub)

Description

tmRNA-SmpB: a journey to the center of the bacterial ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

13 Å

Loop

Sequence

GGGGUG*CACCUC

Length

12 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3IYR|1|A|G|2
3IYR|1|A|G|3
3IYR|1|A|G|4
3IYR|1|A|G|5
3IYR|1|A|U|6
3IYR|1|A|G|7
*
3IYR|1|A|C|339
3IYR|1|A|A|340
3IYR|1|A|C|341
3IYR|1|A|C|342
3IYR|1|A|U|343
3IYR|1|A|C|344

Current chains

Chain A

tmRNA

Nearby chains

Chain B

SsrA-binding protein