IL_3IYR_002

3D structure

PDB id

3IYR (explore in PDB, NAKB, or RNA 3D Hub)

Description

tmRNA-SmpB: a journey to the center of the bacterial ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

13 Å

Loop

Sequence

GUG*CC

Length

5 nucleotides

Bulged bases

3IYR|1|A|U|38

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3IYR_002 not in the Motif Atlas

Geometric match to IL_3W3S_002

Geometric discrepancy: 0.3383

The information below is about IL_3W3S_002

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_97561.5

Basepair signature

cWW-L-cWW

Number of instances in this motif group

149

Unit IDs

3IYR|1|A|G|37
3IYR|1|A|U|38
3IYR|1|A|G|39
*
3IYR|1|A|C|301
3IYR|1|A|C|302

Current chains

Chain A

tmRNA

Nearby chains