IL_3IYR_003

3D structure

PDB id

3IYR (explore in PDB, NAKB, or RNA 3D Hub)

Description

tmRNA-SmpB: a journey to the center of the bacterial ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

13 Å

Loop

Sequence

GCUGCG*CGUAGAGGC

Length

15 nucleotides

Bulged bases

3IYR|1|A|G|43, 3IYR|1|A|U|294, 3IYR|1|A|A|297

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3IYR|1|A|G|40
3IYR|1|A|C|41
3IYR|1|A|U|42
3IYR|1|A|G|43
3IYR|1|A|C|44
3IYR|1|A|G|45
*
3IYR|1|A|C|292
3IYR|1|A|G|293
3IYR|1|A|U|294
3IYR|1|A|A|295
3IYR|1|A|G|296
3IYR|1|A|A|297
3IYR|1|A|G|298
3IYR|1|A|G|299
3IYR|1|A|C|300

Current chains

Chain A

tmRNA

Nearby chains