IL_3IYR_013

3D structure

PDB id

3IYR (explore in PDB, NAKB, or RNA 3D Hub)

Description

tmRNA-SmpB: a journey to the center of the bacterial ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

13 Å

Loop

Sequence

GUCGCCGAGGG*CCGUAGGGAC

Length

21 nucleotides

Bulged bases

3IYR|1|A|G|31, 3IYR|1|A|G|33, 3IYR|1|A|G|34, 3IYR|1|A|G|306

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3IYR|1|A|G|25
3IYR|1|A|U|26
3IYR|1|A|C|27
3IYR|1|A|G|28
3IYR|1|A|C|29
3IYR|1|A|C|30
3IYR|1|A|G|31
3IYR|1|A|A|32
3IYR|1|A|G|33
3IYR|1|A|G|34
3IYR|1|A|G|35
*
3IYR|1|A|C|304
3IYR|1|A|C|305
3IYR|1|A|G|306
3IYR|1|A|U|307
3IYR|1|A|A|308
3IYR|1|A|G|309
3IYR|1|A|G|310
3IYR|1|A|G|311
3IYR|1|A|A|312
3IYR|1|A|C|313

Current chains

Chain A

tmRNA

Nearby chains

Chain B

SsrA-binding protein