IL_3IZ4_006

3D structure

PDB id

3IZ4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Modified E. coli tmRNA in the resume state with the tRNA-like domain in the ribosomal P site interacting with the SmpB

Experimental method

ELECTRON MICROSCOPY

Resolution

13.6 Å

Loop

Sequence

CAU*ACG

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3IZ4_006 not in the Motif Atlas

Geometric match to IL_5TBW_027

Geometric discrepancy: 0.2261

The information below is about IL_5TBW_027

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

3IZ4|1|A|C|117
3IZ4|1|A|A|118
3IZ4|1|A|U|119
*
3IZ4|1|A|A|141
3IZ4|1|A|C|142
3IZ4|1|A|G|143

Current chains

Chain A

Modified E. coli transfer-messenger RNA

Nearby chains