IL_3J0D_003

3D structure

PDB id

3J0D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Models for the T. thermophilus ribosome recycling factor bound to the E. coli post-termination complex

Experimental method

ELECTRON MICROSCOPY

Resolution

11.1 Å

Loop

Sequence

CG*CAG

Length

5 nucleotides

Bulged bases

3J0D|1|E|A|2602

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J0D_003 not in the Motif Atlas

Geometric match to IL_5J7L_344

Geometric discrepancy: 0.1992

The information below is about IL_5J7L_344

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.7

Basepair signature

cWW-L-cWW

Number of instances in this motif group

132

Unit IDs

3J0D|1|E|C|2591
3J0D|1|E|G|2592
*
3J0D|1|E|C|2601
3J0D|1|E|A|2602
3J0D|1|E|G|2603

Current chains

Chain E

ribosomal 23S RNA

Nearby chains

Chain J

Ribosome-recycling factor