IL_3J0D_005

3D structure

PDB id

3J0D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Models for the T. thermophilus ribosome recycling factor bound to the E. coli post-termination complex

Experimental method

ELECTRON MICROSCOPY

Resolution

11.1 Å

Loop

Sequence

GUC*GUC

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J0D_005 not in the Motif Atlas

Geometric match to IL_5MWI_007

Geometric discrepancy: 0.127

The information below is about IL_5MWI_007

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

259

Unit IDs

3J0D|1|H|G|1405
3J0D|1|H|U|1406
3J0D|1|H|C|1407
*
3J0D|1|h|G|1494
3J0D|1|h|U|1495
3J0D|1|h|C|1496

Current chains

Chain H

ribosomal 16S RNA

Chain h

ribosomal 16S RNA

Nearby chains

Chain B

ribosomal 23S RNA