IL_3J0D_006

3D structure

PDB id

3J0D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Models for the T. thermophilus ribosome recycling factor bound to the E. coli post-termination complex

Experimental method

ELECTRON MICROSCOPY

Resolution

11.1 Å

Loop

Sequence

CACA*UGAAG

Length

9 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J0D_006 not in the Motif Atlas

Geometric match to IL_8C3A_473

Geometric discrepancy: 0.2702

The information below is about IL_8C3A_473

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_50458.2

Basepair signature

cWW-cWW-L-R-L-cWW

Number of instances in this motif group

4

Unit IDs

3J0D|1|H|C|1407
3J0D|1|H|A|1408
3J0D|1|H|C|1409
3J0D|1|H|A|1410
*
3J0D|1|h|U|1490
3J0D|1|h|G|1491
3J0D|1|h|A|1492
3J0D|1|h|A|1493
3J0D|1|h|G|1494

Current chains

Chain H

ribosomal 16S RNA

Chain h

ribosomal 16S RNA

Nearby chains

Chain B

ribosomal 23S RNA

Chain I

30S ribosomal protein S12