IL_3J0D_007

3D structure

PDB id

3J0D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Models for the T. thermophilus ribosome recycling factor bound to the E. coli post-termination complex

Experimental method

ELECTRON MICROSCOPY

Resolution

11.1 Å

Loop

Sequence

CAU*GGG

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J0D_007 not in the Motif Atlas

Geometric match to IL_5J7L_061

Geometric discrepancy: 0.0884

The information below is about IL_5J7L_061

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

3J0D|1|H|C|1412
3J0D|1|H|A|1413
3J0D|1|H|U|1414
*
3J0D|1|h|G|1486
3J0D|1|h|G|1487
3J0D|1|h|G|1488

Current chains

Chain H

ribosomal 16S RNA

Chain h

ribosomal 16S RNA

Nearby chains

Chain I

30S ribosomal protein S12