IL_3J5L_005
3D structure
- PDB id
- 3J5L (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the E. coli 50S subunit with ErmBL nascent chain
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.6 Å
Loop
- Sequence
- GUAAG*CGUUAUAAC
- Length
- 14 nucleotides
- Bulged bases
- 3J5L|1|A|U|102
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_3J5L_005 not in the Motif Atlas
- Homologous match to IL_5J7L_248
- Geometric discrepancy: 0.1283
- The information below is about IL_5J7L_248
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_37015.1
- Basepair signature
- cWW-tSS-tSS-tHH-L-tHS-L-R-cWW-L
- Number of instances in this motif group
- 1
Unit IDs
3J5L|1|A|G|81
3J5L|1|A|U|82
3J5L|1|A|A|83
3J5L|1|A|A|84
3J5L|1|A|G|85
*
3J5L|1|A|C|97
3J5L|1|A|G|98
3J5L|1|A|U|99
3J5L|1|A|U|100
3J5L|1|A|A|101
3J5L|1|A|U|102
3J5L|1|A|A|103
3J5L|1|A|A|104
3J5L|1|A|C|105
Current chains
- Chain A
- 23S ribsomal RNA
Nearby chains
- Chain U
- 50S ribosomal protein L24
- Chain Y
- 50S ribosomal protein L29
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