IL_3J5L_051

3D structure

PDB id

3J5L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the E. coli 50S subunit with ErmBL nascent chain

Experimental method

ELECTRON MICROSCOPY

Resolution

6.6 Å

Loop

Sequence

CGAGG*CGUAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J5L_051 not in the Motif Atlas

Homologous match to IL_5J7L_293

Geometric discrepancy: 0.0844

The information below is about IL_5J7L_293

Detailed Annotation

tSH-tHW-tHS

Broad Annotation

No text annotation

Motif group

IL_17136.7

Basepair signature

cWW-tSH-tHW-tHS-cWW

Number of instances in this motif group

14

Unit IDs

3J5L|1|A|C|1357
3J5L|1|A|G|1358
3J5L|1|A|A|1359
3J5L|1|A|G|1360
3J5L|1|A|G|1361
*
3J5L|1|A|C|1370
3J5L|1|A|G|1371
3J5L|1|A|U|1372
3J5L|1|A|A|1373
3J5L|1|A|G|1374

Current chains

Chain A

23S ribsomal RNA

Nearby chains

Chain 2

50S ribosomal protein L34

Chain C

50S ribosomal protein L2

Chain X

50S ribosomal protein L28