IL_3J5L_065

3D structure

PDB id

3J5L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the E. coli 50S subunit with ErmBL nascent chain

Experimental method

ELECTRON MICROSCOPY

Resolution

6.6 Å

Loop

Sequence

GGAA*UC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J5L_065 not in the Motif Atlas

Homologous match to IL_5J7L_306

Geometric discrepancy: 0.0569

The information below is about IL_5J7L_306

Detailed Annotation

Major groove platform; stack outside cWW

Broad Annotation

Major groove platform

Motif group

IL_50694.7

Basepair signature

cWW-tSH-cWW-L

Number of instances in this motif group

27

Unit IDs

3J5L|1|A|G|1666
3J5L|1|A|G|1667
3J5L|1|A|A|1668
3J5L|1|A|A|1669
*
3J5L|1|A|U|1993
3J5L|1|A|C|1994

Current chains

Chain A

23S ribsomal RNA

Nearby chains

Chain D

50S ribosomal protein L3

Chain K

50S ribosomal protein L14