IL_3J5L_068

3D structure

PDB id

3J5L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the E. coli 50S subunit with ErmBL nascent chain

Experimental method

ELECTRON MICROSCOPY

Resolution

6.6 Å

Loop

Sequence

UAUGUAG*UGAAA

Length

12 nucleotides

Bulged bases

3J5L|1|A|U|1714

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J5L_068 not in the Motif Atlas

Homologous match to IL_5J7L_309

Geometric discrepancy: 0.0815

The information below is about IL_5J7L_309

Detailed Annotation

6x5 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_88269.4

Basepair signature

cWW-tWW-cSH-tWH-tHS-cWW

Number of instances in this motif group

3

Unit IDs

3J5L|1|A|U|1712
3J5L|1|A|A|1713
3J5L|1|A|U|1714
3J5L|1|A|G|1715
3J5L|1|A|U|1716
3J5L|1|A|A|1717
3J5L|1|A|G|1718
*
3J5L|1|A|U|1742
3J5L|1|A|G|1743
3J5L|1|A|A|1744
3J5L|1|A|A|1745
3J5L|1|A|A|1746

Current chains

Chain A

23S ribsomal RNA

Nearby chains