IL_3J5L_094
3D structure
- PDB id
- 3J5L (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the E. coli 50S subunit with ErmBL nascent chain
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.6 Å
Loop
- Sequence
- AUA*UGUUU
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_3J5L_094 not in the Motif Atlas
- Homologous match to IL_7A0S_086
- Geometric discrepancy: 0.3056
- The information below is about IL_7A0S_086
- Detailed Annotation
- Major groove minor groove platform with extra cWW
- Broad Annotation
- Major groove minor groove platform with extra cWW
- Motif group
- IL_51387.3
- Basepair signature
- cWW-cSH-cWW-cWW
- Number of instances in this motif group
- 21
Unit IDs
3J5L|1|A|A|2459
3J5L|1|A|U|2460
3J5L|1|A|A|2461
*
3J5L|1|A|U|2489
3J5L|1|A|G|2490
3J5L|1|A|U|2491
3J5L|1|A|U|2492
3J5L|1|A|U|2493
Current chains
- Chain A
- 23S ribsomal RNA
Nearby chains
- Chain 5
- 5'-R(*CP*(MA6))-3'
- Chain M
- 50S ribosomal protein L16
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