3D structure

PDB id
3J5L (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the E. coli 50S subunit with ErmBL nascent chain
Experimental method
ELECTRON MICROSCOPY
Resolution
6.6 Å

Loop

Sequence
CU*AAG
Length
5 nucleotides
Bulged bases
3J5L|1|A|A|2800
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_3J5L_107 not in the Motif Atlas
Geometric match to IL_7RQB_019
Geometric discrepancy: 0.2278
The information below is about IL_7RQB_019
Detailed Annotation
Single bulged A
Broad Annotation
No text annotation
Motif group
IL_37497.6
Basepair signature
cWW-L-cWW
Number of instances in this motif group
118

Unit IDs

3J5L|1|A|C|2795
3J5L|1|A|U|2796
*
3J5L|1|A|A|2799
3J5L|1|A|A|2800
3J5L|1|A|G|2801

Current chains

Chain A
23S ribsomal RNA

Nearby chains

Chain J
50S ribosomal protein L13

Coloring options:


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