IL_3J6B_009
3D structure
- PDB id
- 3J6B (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the yeast mitochondrial large ribosomal subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- UGAACUG*CUAAGUAA
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_3J6B_009 not in the Motif Atlas
- Geometric match to IL_5J7L_250
- Geometric discrepancy: 0.1061
- The information below is about IL_5J7L_250
- Detailed Annotation
- 8x7 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_04346.10
- Basepair signature
- cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 15
Unit IDs
3J6B|1|A|U|228
3J6B|1|A|G|229
3J6B|1|A|A|230
3J6B|1|A|A|231
3J6B|1|A|C|232
3J6B|1|A|U|233
3J6B|1|A|G|234
*
3J6B|1|A|C|241
3J6B|1|A|U|242
3J6B|1|A|A|243
3J6B|1|A|A|244
3J6B|1|A|G|245
3J6B|1|A|U|246
3J6B|1|A|A|247
3J6B|1|A|A|248
Current chains
- Chain A
- 21S ribosomal RNA
Nearby chains
- Chain J
- 54S ribosomal protein L10, mitochondrial
- Chain S
- 54S ribosomal protein L24, mitochondrial
Coloring options: