IL_3J6B_010

3D structure

PDB id

3J6B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast mitochondrial large ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UGAGUAU*AGAAAA

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J6B_010 not in the Motif Atlas

Homologous match to IL_7RQB_007

Geometric discrepancy: 0.137

The information below is about IL_7RQB_007

Detailed Annotation

7x6 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_76042.2

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

9

Unit IDs

3J6B|1|A|U|279
3J6B|1|A|G|280
3J6B|1|A|A|281
3J6B|1|A|G|282
3J6B|1|A|U|283
3J6B|1|A|A|284
3J6B|1|A|U|285
*
3J6B|1|A|A|293
3J6B|1|A|G|294
3J6B|1|A|A|295
3J6B|1|A|A|296
3J6B|1|A|A|297
3J6B|1|A|A|298

Current chains

Chain A

21S ribosomal RNA

Nearby chains

Chain J

54S ribosomal protein L10, mitochondrial

Chain Z

mitochondrial ribosomal protein YNL122C