IL_3J6B_013

3D structure

PDB id

3J6B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast mitochondrial large ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CCG*CUG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J6B_013 not in the Motif Atlas

Homologous match to IL_4WF9_020

Geometric discrepancy: 0.12

The information below is about IL_4WF9_020

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

3J6B|1|A|C|581
3J6B|1|A|C|582
3J6B|1|A|G|583
*
3J6B|1|A|C|697
3J6B|1|A|U|698
3J6B|1|A|G|699

Current chains

Chain A

21S ribosomal RNA

Nearby chains

Chain D

54S ribosomal protein YmL6, mitochondrial

Chain J

54S ribosomal protein L10, mitochondrial