IL_3J6B_022
3D structure
- PDB id
- 3J6B (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the yeast mitochondrial large ribosomal subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- UGGUAC*GAAAUA
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_3J6B_022 not in the Motif Atlas
- Homologous match to IL_7A0S_027
- Geometric discrepancy: 0.1653
- The information below is about IL_7A0S_027
- Detailed Annotation
- 5x5 Sarcin-Ricin with intercalated A; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_81631.1
- Basepair signature
- cWW-L-R-cSH-R-R-L-R-cWW
- Number of instances in this motif group
- 2
Unit IDs
3J6B|1|A|U|780
3J6B|1|A|G|781
3J6B|1|A|G|782
3J6B|1|A|U|783
3J6B|1|A|A|784
3J6B|1|A|C|785
*
3J6B|1|A|G|841
3J6B|1|A|A|842
3J6B|1|A|A|843
3J6B|1|A|A|844
3J6B|1|A|U|845
3J6B|1|A|A|846
Current chains
- Chain A
- 21S ribosomal RNA
Nearby chains
- Chain E
- 54S ribosomal protein L7, mitochondrial
- Chain K
- 54S ribosomal protein L16, mitochondrial
- Chain R
- 54S ribosomal protein L2, mitochondrial
- Chain U
- 54S ribosomal protein L33, mitochondrial
- Chain c
- 54S ribosomal protein L31, mitochondrial
Coloring options: