IL_3J6B_025

3D structure

PDB id

3J6B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast mitochondrial large ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UAU*AA

Length

5 nucleotides

Bulged bases

3J6B|1|A|A|798

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J6B_025 not in the Motif Atlas

Geometric match to IL_5TBW_060

Geometric discrepancy: 0.2251

The information below is about IL_5TBW_060

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

127

Unit IDs

3J6B|1|A|U|797
3J6B|1|A|A|798
3J6B|1|A|U|799
*
3J6B|1|A|A|828
3J6B|1|A|A|829

Current chains

Chain A

21S ribosomal RNA

Nearby chains

Chain E

54S ribosomal protein L7, mitochondrial

Chain K

54S ribosomal protein L16, mitochondrial