IL_3J6B_028

3D structure

PDB id

3J6B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast mitochondrial large ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UGU*AAA

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J6B_028 not in the Motif Atlas

Homologous match to IL_7A0S_031

Geometric discrepancy: 0.2803

The information below is about IL_7A0S_031

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

214

Unit IDs

3J6B|1|A|U|877
3J6B|1|A|G|878
3J6B|1|A|U|879
*
3J6B|1|A|A|890
3J6B|1|A|A|891
3J6B|1|A|A|892

Current chains

Chain A

21S ribosomal RNA

Nearby chains

Chain K

54S ribosomal protein L16, mitochondrial

Chain c

54S ribosomal protein L31, mitochondrial