IL_3J6B_031
3D structure
- PDB id
- 3J6B (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the yeast mitochondrial large ribosomal subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- AUAAGUG*CUUAAUAAUAAGAAU
- Length
- 22 nucleotides
- Bulged bases
- 3J6B|1|A|U|1114, 3J6B|1|A|A|1119
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_3J6B_031 not in the Motif Atlas
- Geometric match to IL_4WF9_039
- Geometric discrepancy: 0.1066
- The information below is about IL_4WF9_039
- Detailed Annotation
- Kink-turn related
- Broad Annotation
- No text annotation
- Motif group
- IL_57188.6
- Basepair signature
- cWW-tWW-L-tWW-cWW-cSH
- Number of instances in this motif group
- 6
Unit IDs
3J6B|1|A|A|943
3J6B|1|A|U|944
3J6B|1|A|A|945
3J6B|1|A|A|946
3J6B|1|A|G|947
3J6B|1|A|U|948
3J6B|1|A|G|949
*
3J6B|1|A|C|1106
3J6B|1|A|U|1107
3J6B|1|A|U|1108
3J6B|1|A|A|1109
3J6B|1|A|A|1110
3J6B|1|A|U|1111
3J6B|1|A|A|1112
3J6B|1|A|A|1113
3J6B|1|A|U|1114
3J6B|1|A|A|1115
3J6B|1|A|A|1116
3J6B|1|A|G|1117
3J6B|1|A|A|1118
3J6B|1|A|A|1119
3J6B|1|A|U|1120
Current chains
- Chain A
- 21S ribosomal RNA
Nearby chains
- Chain 0
- 54S ribosomal protein RTC6, mitochondrial
- Chain 4
- 54S ribosomal protein L51, mitochondrial
- Chain C
- 54S ribosomal protein L9, mitochondrial
- Chain F
- 54S ribosomal protein L6, mitochondrial
- Chain H
- 54S ribosomal protein L23, mitochondrial
- Chain c
- 54S ribosomal protein L31, mitochondrial
Coloring options: