IL_3J6B_034
3D structure
- PDB id
- 3J6B (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the yeast mitochondrial large ribosomal subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- AUGAGUAA*UGAAAUU
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_3J6B_034 not in the Motif Atlas
- Homologous match to IL_5J7L_289
- Geometric discrepancy: 0.0848
- The information below is about IL_5J7L_289
- Detailed Annotation
- 8x7 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_04346.10
- Basepair signature
- cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 15
Unit IDs
3J6B|1|A|A|1295
3J6B|1|A|U|1296
3J6B|1|A|G|1297
3J6B|1|A|A|1298
3J6B|1|A|G|1299
3J6B|1|A|U|1300
3J6B|1|A|A|1301
3J6B|1|A|A|1302
*
3J6B|1|A|U|1911
3J6B|1|A|G|1912
3J6B|1|A|A|1913
3J6B|1|A|A|1914
3J6B|1|A|A|1915
3J6B|1|A|U|1916
3J6B|1|A|U|1917
Current chains
- Chain A
- 21S ribosomal RNA
Nearby chains
- Chain 3
- 54S ribosomal protein L27, mitochondrial
- Chain D
- 54S ribosomal protein YmL6, mitochondrial
- Chain O
- 54S ribosomal protein L22, mitochondrial
- Chain W
- 54S ribosomal protein L32, mitochondrial
Coloring options: