IL_3J6B_040

3D structure

PDB id

3J6B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast mitochondrial large ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

AUAU*AAUU

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J6B_040 not in the Motif Atlas

Geometric match to IL_4WF9_109

Geometric discrepancy: 0.1842

The information below is about IL_4WF9_109

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_30621.4

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

66

Unit IDs

3J6B|1|A|A|1477
3J6B|1|A|U|1478
3J6B|1|A|A|1479
3J6B|1|A|U|1480
*
3J6B|1|A|A|1481
3J6B|1|A|A|1482
3J6B|1|A|U|1483
3J6B|1|A|U|1484

Current chains

Chain A

21S ribosomal RNA

Nearby chains