IL_3J6B_049

3D structure

PDB id

3J6B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast mitochondrial large ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UGCAGAA*UUAAGUAUA

Length

16 nucleotides

Bulged bases

3J6B|1|A|A|1708, 3J6B|1|A|A|1724, 3J6B|1|A|U|1728

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J6B_049 not in the Motif Atlas

Homologous match to IL_7RQB_070

Geometric discrepancy: 0.1983

The information below is about IL_7RQB_070

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_17069.3

Basepair signature

cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

Number of instances in this motif group

5

Unit IDs

3J6B|1|A|U|1705
3J6B|1|A|G|1706
3J6B|1|A|C|1707
3J6B|1|A|A|1708
3J6B|1|A|G|1709
3J6B|1|A|A|1710
3J6B|1|A|A|1711
*
3J6B|1|A|U|1721
3J6B|1|A|U|1722
3J6B|1|A|A|1723
3J6B|1|A|A|1724
3J6B|1|A|G|1725
3J6B|1|A|U|1726
3J6B|1|A|A|1727
3J6B|1|A|U|1728
3J6B|1|A|A|1729

Current chains

Chain A

21S ribosomal RNA

Nearby chains

Chain B

54S ribosomal protein RML2, mitochondrial