IL_3J6B_058

3D structure

PDB id

3J6B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast mitochondrial large ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

ACG*CUAU

Length

7 nucleotides

Bulged bases

3J6B|1|A|C|1955, 3J6B|1|A|U|2880

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J6B_058 not in the Motif Atlas

Homologous match to IL_5J7L_321

Geometric discrepancy: 0.1758

The information below is about IL_5J7L_321

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_83389.2

Basepair signature

cWW-cWW

Number of instances in this motif group

5

Unit IDs

3J6B|1|A|A|1954
3J6B|1|A|C|1955
3J6B|1|A|G|1956
*
3J6B|1|A|C|2879
3J6B|1|A|U|2880
3J6B|1|A|A|2881
3J6B|1|A|U|2882

Current chains

Chain A

21S ribosomal RNA

Nearby chains

Chain C

54S ribosomal protein L9, mitochondrial

Chain O

54S ribosomal protein L22, mitochondrial

Chain W

54S ribosomal protein L32, mitochondrial