IL_3J6B_059

3D structure

PDB id

3J6B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast mitochondrial large ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

AUG*CU

Length

5 nucleotides

Bulged bases

3J6B|1|A|U|1968

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J6B_059 not in the Motif Atlas

Homologous match to IL_4WF9_080

Geometric discrepancy: 0.1072

The information below is about IL_4WF9_080

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_89505.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

117

Unit IDs

3J6B|1|A|A|1967
3J6B|1|A|U|1968
3J6B|1|A|G|1969
*
3J6B|1|A|C|2708
3J6B|1|A|U|2709

Current chains

Chain A

21S ribosomal RNA

Nearby chains

Chain D

54S ribosomal protein YmL6, mitochondrial

Chain J

54S ribosomal protein L10, mitochondrial