IL_3J6B_071

3D structure

PDB id

3J6B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast mitochondrial large ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

AUA*UGUUU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J6B_071 not in the Motif Atlas

Homologous match to IL_5J7L_337

Geometric discrepancy: 0.114

The information below is about IL_5J7L_337

Detailed Annotation

Major groove minor groove platform with extra cWW

Broad Annotation

Major groove minor groove platform with extra cWW

Motif group

IL_51387.3

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

21

Unit IDs

3J6B|1|A|A|2725
3J6B|1|A|U|2726
3J6B|1|A|A|2727
*
3J6B|1|A|U|2755
3J6B|1|A|G|2756
3J6B|1|A|U|2757
3J6B|1|A|U|2758
3J6B|1|A|U|2759

Current chains

Chain A

21S ribosomal RNA

Nearby chains

Chain K

54S ribosomal protein L16, mitochondrial