IL_3J6B_076

3D structure

PDB id

3J6B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast mitochondrial large ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UC*GAAG

Length

6 nucleotides

Bulged bases

3J6B|1|A|A|2809

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J6B_076 not in the Motif Atlas

Homologous match to IL_7RQB_099

Geometric discrepancy: 0.1087

The information below is about IL_7RQB_099

Detailed Annotation

Major groove platform with intercalation

Broad Annotation

Major groove platform

Motif group

IL_95601.3

Basepair signature

cWW-tSH-cWW

Number of instances in this motif group

10

Unit IDs

3J6B|1|A|U|2788
3J6B|1|A|C|2789
*
3J6B|1|A|G|2807
3J6B|1|A|A|2808
3J6B|1|A|A|2809
3J6B|1|A|G|2810

Current chains

Chain A

21S ribosomal RNA

Nearby chains

Chain 0

54S ribosomal protein RTC6, mitochondrial

Chain H

54S ribosomal protein L23, mitochondrial