IL_3J6B_082

3D structure

PDB id

3J6B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast mitochondrial large ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UU*AUAG

Length

6 nucleotides

Bulged bases

3J6B|1|A|U|3048, 3J6B|1|A|A|3049

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J6B_082 not in the Motif Atlas

Homologous match to IL_5J7L_349

Geometric discrepancy: 0.1263

The information below is about IL_5J7L_349

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_42626.2

Basepair signature

cWW-cWW

Number of instances in this motif group

14

Unit IDs

3J6B|1|A|U|2962
3J6B|1|A|U|2963
*
3J6B|1|A|A|3047
3J6B|1|A|U|3048
3J6B|1|A|A|3049
3J6B|1|A|G|3050

Current chains

Chain A

21S ribosomal RNA

Nearby chains

Chain L

54S ribosomal protein L8, mitochondrial

Chain M

54S ribosomal protein IMG1, mitochondrial

Chain T

54S ribosomal protein L4, mitochondrial