IL_3J6B_085

3D structure

PDB id

3J6B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast mitochondrial large ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

AAUAAA*UGAAGU

Length

12 nucleotides

Bulged bases

3J6B|1|A|A|3102

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J6B_085 not in the Motif Atlas

Homologous match to IL_7RQB_107

Geometric discrepancy: 0.1159

The information below is about IL_7RQB_107

Detailed Annotation

UAA/GAN with extra cWW

Broad Annotation

No text annotation

Motif group

IL_49767.5

Basepair signature

cWW-cWW-tWH-L-tHS-cWW

Number of instances in this motif group

5

Unit IDs

3J6B|1|A|A|3073
3J6B|1|A|A|3074
3J6B|1|A|U|3075
3J6B|1|A|A|3076
3J6B|1|A|A|3077
3J6B|1|A|A|3078
*
3J6B|1|A|U|3099
3J6B|1|A|G|3100
3J6B|1|A|A|3101
3J6B|1|A|A|3102
3J6B|1|A|G|3103
3J6B|1|A|U|3104

Current chains

Chain A

21S ribosomal RNA

Nearby chains

Chain 0

54S ribosomal protein RTC6, mitochondrial

Chain F

54S ribosomal protein L6, mitochondrial

Chain H

54S ribosomal protein L23, mitochondrial