IL_3J6B_086
3D structure
- PDB id
- 3J6B (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the yeast mitochondrial large ribosomal subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- AAUC*GU
- Length
- 6 nucleotides
- Bulged bases
- 3J6B|1|A|A|3124, 3J6B|1|A|U|3125
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_3J6B_086 not in the Motif Atlas
- Geometric match to IL_7V9E_001
- Geometric discrepancy: 0.2697
- The information below is about IL_7V9E_001
- Detailed Annotation
- Multiple bulged bases
- Broad Annotation
- No text annotation
- Motif group
- IL_82107.2
- Basepair signature
- cWW-cWW
- Number of instances in this motif group
- 34
Unit IDs
3J6B|1|A|A|3123
3J6B|1|A|A|3124
3J6B|1|A|U|3125
3J6B|1|A|C|3126
*
3J6B|1|A|G|3259
3J6B|1|A|U|3260
Current chains
- Chain A
- 21S ribosomal RNA
Nearby chains
- Chain C
- 54S ribosomal protein L9, mitochondrial
- Chain L
- 54S ribosomal protein L8, mitochondrial
- Chain M
- 54S ribosomal protein IMG1, mitochondrial
- Chain a
- 54S ribosomal protein L20, mitochondrial
Coloring options: