IL_3J71_005

3D structure

PDB id

3J71 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mammalian 60S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GCCGAAU*ACAUGUGGC

Length

16 nucleotides

Bulged bases

3J71|1|5|G|119, 3J71|1|5|U|150

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3J71|1|5|G|116
3J71|1|5|C|117
3J71|1|5|C|118
3J71|1|5|G|119
3J71|1|5|A|120
3J71|1|5|A|121
3J71|1|5|U|122
*
3J71|1|5|A|147
3J71|1|5|C|148
3J71|1|5|A|149
3J71|1|5|U|150
3J71|1|5|G|151
3J71|1|5|U|152
3J71|1|5|G|153
3J71|1|5|G|154
3J71|1|5|C|155

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain 8

5.8S ribosomal RNA; 5.8S rRNA

Chain G

Ribosomal protein eL8

Chain N

Ribosomal protein eL15

Chain h

Ribosomal protein uL29

Chain i

Ribosomal protein eL36