IL_3J71_024

3D structure

PDB id

3J71 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mammalian 60S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GAAGG*CAGCAGCACUC

Length

16 nucleotides

Bulged bases

3J71|1|5|G|933, 3J71|1|5|A|935, 3J71|1|5|C|936, 3J71|1|5|U|937

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3J71|1|5|G|731
3J71|1|5|A|732
3J71|1|5|A|733
3J71|1|5|G|734
3J71|1|5|G|735
*
3J71|1|5|C|928
3J71|1|5|A|929
3J71|1|5|G|930
3J71|1|5|C|931
3J71|1|5|A|932
3J71|1|5|G|933
3J71|1|5|C|934
3J71|1|5|A|935
3J71|1|5|C|936
3J71|1|5|U|937
3J71|1|5|C|938

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain C

Ribosomal protein uL4

Chain M

Ribosomal protein eL14

Chain S

Ribosomal protein eL20