IL_3J71_033

3D structure

PDB id

3J71 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mammalian 60S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CA*UCG

Length

5 nucleotides

Bulged bases

3J71|1|5|C|1210

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J71_033 not in the Motif Atlas

Geometric match to IL_7KGA_001

Geometric discrepancy: 0.2911

The information below is about IL_7KGA_001

Detailed Annotation

Single bulged C

Broad Annotation

No text annotation

Motif group

IL_05642.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

67

Unit IDs

3J71|1|5|C|1086
3J71|1|5|A|1087
*
3J71|1|5|U|1209
3J71|1|5|C|1210
3J71|1|5|G|1211

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain F

Ribosomal protein uL30