IL_3J71_057

3D structure

PDB id

3J71 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mammalian 60S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GAGUG*CUC

Length

8 nucleotides

Bulged bases

3J71|1|5|A|2002

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J71_057 not in the Motif Atlas

Geometric match to IL_5D8H_003

Geometric discrepancy: 0.1612

The information below is about IL_5D8H_003

Detailed Annotation

Major groove platform with extra cWW

Broad Annotation

Major groove platform

Motif group

IL_36931.3

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

26

Unit IDs

3J71|1|5|G|2001
3J71|1|5|A|2002
3J71|1|5|G|2003
3J71|1|5|U|2004
3J71|1|5|G|2005
*
3J71|1|5|C|2014
3J71|1|5|U|2015
3J71|1|5|C|2016

Current chains

Chain 5

28S ribosomal RNA

Nearby chains