IL_3J71_059
3D structure
- PDB id
- 3J71 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the mammalian 60S ribosomal subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- UGAGC*GCCG
- Length
- 9 nucleotides
- Bulged bases
- 3J71|1|5|A|2300
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_3J71_059 not in the Motif Atlas
- Geometric match to IL_4EYA_010
- Geometric discrepancy: 0.3701
- The information below is about IL_4EYA_010
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_37443.1
- Basepair signature
- cWW-cWW-L-R-cWW
- Number of instances in this motif group
- 11
Unit IDs
3J71|1|5|U|2298
3J71|1|5|G|2299
3J71|1|5|A|2300
3J71|1|5|G|2301
3J71|1|5|C|2302
*
3J71|1|5|G|2333
3J71|1|5|C|2334
3J71|1|5|C|2335
3J71|1|5|G|2336
Current chains
- Chain 5
- 28S ribosomal RNA
Nearby chains
- Chain 8
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain C
- Ribosomal protein uL4
- Chain e
- Ribosomal protein eL32
- Chain r
- Ribosomal protein eL28
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